Dark Chocolate Protein Muffins Recipe
Introduction
These dark chocolate protein muffins are a delicious and wholesome treat perfect for breakfast or a snack. Packed with protein and rich cocoa flavor, they satisfy chocolate cravings while keeping you energized throughout the day.

Ingredients
- 2 cups Whole Wheat Flour
- 1 cup Brown Sugar
- 3 tablespoons Baking Soda
- 1 cup Unsweetened Cocoa Powder
- 1/2 cup Protein Powder
- 2 tablespoons Chia Seeds
- 1 cup Dark Chocolate Chunks
- 1 cup Chocolate Milk
- 1 cup Apple Sauce
- 7 Eggs
- 1 tablespoon Vanilla Extract
- Coarse Sugar, to taste
Instructions
- Step 1: Preheat your oven to 350 degrees F (180 degrees C). Lightly grease a muffin pan with coconut oil or butter. Use a rolling pin to break up the dark chocolate chunks into smaller pieces.
- Step 2: In a large bowl, whisk together chocolate milk, apple sauce, eggs, and vanilla extract until well combined.
- Step 3: In a separate bowl, mix the whole wheat flour, brown sugar, baking soda, unsweetened cocoa powder, protein powder, and chia seeds until evenly blended.
- Step 4: Gradually add the wet ingredients to the dry ingredients, stirring continuously until the batter is smooth. Fold in the dark chocolate chunks gently.
- Step 5: Spoon the batter into the prepared muffin cups, filling each about three-quarters full. Bake for 20 to 25 minutes, or until a toothpick inserted into the center comes out clean.
- Step 6: Once baked, sprinkle the tops of the muffins with coarse sugar for a slight crunch and extra sweetness. Let them cool slightly before serving. Enjoy!
Tips & Variations
- For extra moisture, substitute half of the chocolate milk with Greek yogurt.
- Swap chia seeds for flaxseeds if preferred, keeping the same quantity.
- Use dark chocolate chips instead of chunks for a more uniform texture.
- To boost flavor, add a pinch of cinnamon or espresso powder to the dry ingredients.
Storage
Store these muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze them in a sealed bag or container for up to 2 months. Reheat in the microwave for about 20 seconds or until warm.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I use regular milk instead of chocolate milk?
Yes, you can substitute regular milk, but the chocolate flavor will be less intense. Consider adding extra cocoa powder or chocolate chips to maintain richness.
Is it possible to make these muffins dairy-free?
Absolutely. Use a plant-based milk such as almond or oat milk and replace the butter or coconut oil used for greasing with a dairy-free alternative.
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Dark Chocolate Protein Muffins Recipe
- Total Time: 40 minutes
- Yield: 12 muffins 1x
- Diet: Low Fat
Description
Delicious and nutritious Dark Chocolate Protein Muffins made with whole wheat flour, protein powder, and chia seeds. These muffins are rich in cocoa and dark chocolate chunks, perfect for a healthy snack or breakfast treat that combines indulgence with protein-packed ingredients.
Ingredients
Dry Ingredients
- 2 cups Whole Wheat Flour
- 1 cup Brown Sugar
- 3 tablespoons Baking Soda
- 1 cup Unsweetened Cocoa Powder
- 1/2 cup Protein Powder
- 2 tablespoons Chia Seeds
- 1 cup Dark Chocolate Chunks
Wet Ingredients
- 1 cup Chocolate Milk
- 1 cup Apple Sauce
- 7 Eggs
- 1 tablespoon Vanilla Extract
Garnish
- Coarse Sugar, to taste
Instructions
- Preheat and Prepare Pan: Preheat your oven to 350 degrees F (180 degrees C). Lightly grease a muffin pan using coconut oil or butter. Break the dark chocolate chunks into smaller pieces using a rolling pin for even distribution.
- Mix Wet Ingredients: In a large bowl, whisk together the chocolate milk, apple sauce, eggs, and vanilla extract until well combined.
- Mix Dry Ingredients: In a separate bowl, combine the whole wheat flour, brown sugar, baking soda, unsweetened cocoa powder, protein powder, and chia seeds, mixing thoroughly.
- Combine Wet and Dry: Slowly add the wet mixture to the dry ingredients while stirring continuously. Mix until the batter is smooth and homogeneous, then fold in the dark chocolate chunks roughly to incorporate.
- Fill Muffin Cups: Spoon the batter into the muffin cups, filling each about three-quarters full to allow room for rising.
- Bake Muffins: Place the muffin pan in the preheated oven and bake for 20-25 minutes or until a toothpick inserted into the center comes out clean without batter sticking to it.
- Garnish and Serve: After baking, sprinkle coarse sugar on top of the muffins for an added crunch and sweetness. Allow muffins to cool slightly before serving. Enjoy your protein-packed dark chocolate muffins!
Notes
- Use whole wheat flour for added fiber and nutrients.
- The protein powder can be any flavor you prefer, though unflavored or chocolate works best.
- Chia seeds add extra fiber and omega-3 fatty acids.
- Apple sauce serves as a healthy substitute for oil or butter, providing moisture with less fat.
- Check muffins starting at 20 minutes to avoid overbaking.
- These muffins freeze well—store in an airtight container for up to 1 month.
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Category: Bakery
- Method: Baking
- Cuisine: American
Keywords: dark chocolate protein muffins, healthy muffins, whole wheat muffins, protein packed snacks, chia seed muffins, chocolate muffins

